GenomicTools.fileHandler - File Handlers for Genomic Data Analysis

A collection of I/O tools for handling the most commonly used genomic datafiles, like fasta/-q, bed, gff, gtf, ped/map and vcf.

Last updated 11 months ago

4.48 score 2 dependents 4 scripts 359 downloads

Fluidigm - Handling Fluidigm Data

Designed to streamline the process of analyzing genotyping data from Fluidigm machines, this package offers a suite of tools for data handling and analysis. It includes functions for converting Fluidigm data to format used by 'PLINK', estimating errors, calculating pairwise similarities, determining pairwise similarity loci, and generating a similarity matrix.

Last updated 11 months ago

4.40 score 1 stars 202 downloads

hoardeR - Collect and Retrieve Annotation Data for Various Genomic Data Using Different Webservices

Cross-species identification of novel gene candidates using the NCBI web service is provided. Further, sets of miRNA target genes can be identified by using the targetscan.org API.

Last updated 10 months ago

3.70 score 1 stars 6 scripts 358 downloads

REPPlab - R Interface to 'EPP-Lab', a Java Program for Exploratory Projection Pursuit

An R Interface to 'EPP-lab' v1.0. 'EPP-lab' is a Java program for projection pursuit using genetic algorithms written by Alain Berro and S. Larabi Marie-Sainte and is included in the package. The 'EPP-lab' sources are available under https://github.com/fischuu/EPP-lab.git.

Last updated 2 years ago

openjdk

2.95 score 1 dependents 30 scripts 697 downloads

gMWT - Generalized Mann-Whitney Type Tests

Generalized Mann-Whitney type tests based on probabilistic indices and new diagnostic plots, for the underlying manuscript see Fischer, Oja (2015) <doi:10.18637/jss.v065.i09>.

Last updated 10 months ago

openblascpp

2.78 score 12 scripts 253 downloads