GenomicTools.fileHandler - File Handlers for Genomic Data Analysis
A collection of I/O tools for handling the most commonly used genomic datafiles, like fasta/-q, bed, gff, gtf, ped/map and vcf.
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4.18 score 1 dependents 5 scripts 357 downloadsgMWT - Generalized Mann-Whitney Type Tests
Generalized Mann-Whitney type tests based on probabilistic indices and new diagnostic plots, for the underlying manuscript see Fischer, Oja (2015) <doi:10.18637/jss.v065.i09>.
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openblascpp
2.78 score 12 scripts 205 downloadsFluidigm - Handling Fluidigm Data
Designed to streamline the process of analyzing genotyping data from Fluidigm machines, this package offers a suite of tools for data handling and analysis. It includes functions for converting Fluidigm data to format used by 'PLINK', estimating errors, calculating pairwise similarities, determining pairwise similarity loci, and generating a similarity matrix.
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3.70 score 1 stars 114 downloadsREPPlab - R Interface to 'EPP-Lab', a Java Program for Exploratory Projection Pursuit
An R Interface to 'EPP-lab' v1.0. 'EPP-lab' is a Java program for projection pursuit using genetic algorithms written by Alain Berro and S. Larabi Marie-Sainte and is included in the package. The 'EPP-lab' sources are available under https://github.com/fischuu/EPP-lab.git.
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openjdk
3.55 score 1 dependents 30 scripts 3.9k downloads