Package: hoardeR 0.10

hoardeR: Collect and Retrieve Annotation Data for Various Genomic Data Using Different Webservices

Cross-species identification of novel gene candidates using the NCBI web service is provided. Further, sets of miRNA target genes can be identified by using the targetscan.org API.

Authors:Daniel Fischer [aut, cre], Anu Sironen [aut]

hoardeR_0.10.tar.gz
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hoardeR_0.10.tgz(r-4.4-any)hoardeR_0.10.tgz(r-4.3-any)
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hoardeR_0.10.tgz(r-4.4-emscripten)hoardeR_0.10.tgz(r-4.3-emscripten)
hoardeR.pdf |hoardeR.html✨
hoardeR/json (API)

Peer review:

Bug tracker:https://github.com/fischuu/hoarder/issues

On CRAN:

18 exports 1 stars 1.11 score 80 dependencies 1 mentions 6 scripts 350 downloads

Last updated 5 months agofrom:b463fc906c. Checks:OK: 1 NOTE: 6. Indexed: yes.

Exports:blastSeqcoverageDensityfindSpeciesgetAnnotationgetEnsgInfogetFastaFromBedgetGeneLocationgetGeneSeqgetSequenceFromNCBIintersectXMLAnnotplotCoverageplotHitspeciessubDosesubGprobssubPhasedtableSpeciestargetScan

Dependencies:ade4askpassbamsignalsbase64encBHBiocGenericsBiocParallelBiostringsbitopsbslibcachemclicodetoolscpp11crayoncurldata.tabledigestevaluatefastmapfontawesomeformatRfsfutile.loggerfutile.optionsGenomeInfoDbGenomeInfoDbDataGenomicRangesGenomicTools.fileHandlergluehighrhtmltoolshttrIRangesjquerylibjsonliteKernSmoothknitrlambda.rlatticelifecyclemagrittrMASSMatrixmemoisemimenlmeopensslpixmapR.methodsS3R.ooR.utilsR6rappdirsRcppRcppArmadilloRCurlRhtslibrlangrmarkdownRsamtoolsS4VectorssasssegmentedseqinrsnowsnpStatsspstringistringrsurvivalsystinytexUCSC.utilsvctrsxfunXMLXVectoryamlzlibbioc