{
  "_id": "6a1eaaeeb25058d4daad9b1f",
  "Package": "Fluidigm",
  "Title": "Handling Fluidigm Data",
  "Version": "0.2",
  "Authors@R": "c(person(given=\"Daniel\", family=\"Fischer\", email=\"Daniel.Fischer@luke.fi\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-7513-683X\")),\nperson(given=\"Helena\", family=\"Johansson\", role = c(\"ctb\", \"fnd\")),\nperson(given=\"Robert\", family=\"Ekblom\", role = c(\"aut\"),\ncomment = c(ORCID = \"0000-0003-2222-1966\")))",
  "Description": "Designed to streamline the process of analyzing genotyping\ndata from Fluidigm machines, this package offers a suite of\ntools for data handling and analysis. It includes functions for\nconverting Fluidigm data to format used by 'PLINK', estimating\nerrors, calculating pairwise similarities, determining pairwise\nsimilarity loci, and generating a similarity matrix.",
  "License": "GPL-3",
  "Encoding": "UTF-8",
  "SystemRequirements": "perl (>= 5.10.0), plink (>=1.07)",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.2.3",
  "VignetteBuilder": "knitr",
  "Config/pak/sysreqs": "perl",
  "Repository": "https://fischuu.r-universe.dev",
  "Date/Publication": "2024-03-13 05:48:53 UTC",
  "RemoteUrl": "https://github.com/fischuu/fluidigm",
  "RemoteRef": "HEAD",
  "RemoteSha": "e315c14ea57a391d32bb4b32783ff0c1dd1a8dde",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-02 10:02:24 UTC",
    "User": "root"
  },
  "Author": "Daniel Fischer [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-7513-683X>),\nHelena Johansson [ctb, fnd],\nRobert Ekblom [aut] (ORCID: <https://orcid.org/0000-0003-2222-1966>)",
  "Maintainer": "Daniel Fischer <Daniel.Fischer@luke.fi>",
  "MD5sum": "27a06bb1fae4a738f22162ace3609b4c",
  "_user": "fischuu",
  "_type": "src",
  "_file": "Fluidigm_0.2.tar.gz",
  "_fileid": "1cea867a6de3243302cebb9d6f77fcd90d90a9868dda50f50e8bca07529392b3",
  "_filesize": 457011,
  "_sha256": "1cea867a6de3243302cebb9d6f77fcd90d90a9868dda50f50e8bca07529392b3",
  "_created": "2026-06-02T10:02:24.000Z",
  "_published": "2026-06-02T10:05:34.417Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79046480543,
      "time": 139,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7354749480"
    },
    {
      "job": 79046480507,
      "time": 119,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7354742230"
    },
    {
      "job": 79046480587,
      "time": 153,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7354744390"
    },
    {
      "job": 79046480533,
      "time": 127,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7354737835"
    },
    {
      "job": 79045970469,
      "time": 175,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7354698299"
    },
    {
      "job": 79046480382,
      "time": 155,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7354754866"
    },
    {
      "job": 79046480372,
      "time": 100,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7354736120"
    },
    {
      "job": 79046480452,
      "time": 81,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7354729089"
    },
    {
      "job": 79046480532,
      "time": 83,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7354729525"
    }
  ],
  "_buildurl": "https://github.com/r-universe/fischuu/actions/runs/26812522245",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/fischuu/fluidigm",
  "_commit": {
    "id": "e315c14ea57a391d32bb4b32783ff0c1dd1a8dde",
    "author": "Daniel Fischer <github@danielfischer.name>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Logo path adjusted",
    "time": 1710308933
  },
  "_maintainer": {
    "name": "Daniel Fischer",
    "email": "daniel.fischer@luke.fi",
    "login": "fischuu",
    "mastodon": "@fischuu@genomic.social",
    "bluesky": "@fischuu.bsky.social",
    "linkedin": "in/fischuu",
    "twitter": "@fischuu",
    "description": "Bioinformatics & statistics @lukefi",
    "uuid": 3908800,
    "orcid": "0000-0002-7513-683X"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "data.table",
      "version": ">= 1.9.4",
      "role": "Imports"
    },
    {
      "package": "graphics",
      "role": "Imports"
    },
    {
      "package": "grDevices",
      "role": "Imports"
    },
    {
      "package": "reshape",
      "version": ">= 0.8.8",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "digest",
      "role": "Suggests"
    }
  ],
  "_owner": "fischuu",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 1,
  "_contributors": [
    {
      "user": "fischuu",
      "count": 57,
      "uuid": 3908800
    }
  ],
  "_userbio": {
    "uuid": 3908800,
    "type": "user",
    "name": "Daniel Fischer",
    "description": "Bioinformatics & statistics @lukefi"
  },
  "_downloads": {
    "count": 114,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/Fluidigm"
  },
  "_devurl": "https://github.com/fischuu/fluidigm",
  "_searchresults": 0,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/Fluidigm.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/fischuu/fluidigm",
  "_realowner": "fischuu",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.2",
      "date": "2024-03-12"
    }
  ],
  "_exports": [
    "calculatePairwiseSimilarities",
    "estimateErrors",
    "fluidigm2PLINK",
    "fluidigmAnalysisWrapper",
    "getPairwiseSimilarityLoci",
    "similarityMatrix"
  ],
  "_help": [
    {
      "page": "calculatePairwiseSimilarities",
      "title": "Run plink to Calculate Pairwise Similarities",
      "topics": [
        "calculatePairwiseSimilarities"
      ]
    },
    {
      "page": "estimateErrors",
      "title": "Estimate Errors in 'PLINK'' ped files",
      "topics": [
        "estimateErrors"
      ]
    },
    {
      "page": "Fluidigm",
      "title": "Fluidigm",
      "topics": [
        "Fluidigm-package",
        "Fluidigm"
      ]
    },
    {
      "page": "fluidigm2PLINK",
      "title": "Convert Fluidigm Output to 'PLINK' Format",
      "topics": [
        "fluidigm2PLINK"
      ]
    },
    {
      "page": "fluidigmAnalysisWrapper",
      "title": "Run the Fluidigm Analysis Script Together",
      "topics": [
        "fluidigmAnalysisWrapper"
      ]
    },
    {
      "page": "getPairwiseSimilarityLoci",
      "title": "Get Pairwise Similarity Loci",
      "topics": [
        "getPairwiseSimilarityLoci"
      ]
    },
    {
      "page": "similarityMatrix",
      "title": "Calculate the similarity matrix",
      "topics": [
        "similarityMatrix"
      ]
    }
  ],
  "_readme": "https://github.com/fischuu/fluidigm/raw/HEAD/README.md",
  "_rundeps": [
    "data.table",
    "plyr",
    "Rcpp",
    "reshape"
  ],
  "_vignettes": [
    {
      "source": "Vignette.Rmd",
      "filename": "Vignette.html",
      "title": "Vignette",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Preparations",
        "Requirements",
        "Installation",
        "Cran (tba)",
        "GitHub",
        "Usage",
        "Example data and preparations",
        "Fluidigm to Plink",
        "Output",
        "Estimate errors",
        "Replicates",
        "Calculate pairwise similarities",
        "Get pairwise similarity loci",
        "Similarity Matrix",
        "Run all commands at once",
        "FAQ"
      ],
      "created": "2024-02-16 16:48:09",
      "modified": "2024-02-26 13:50:25",
      "commits": 12
    }
  ],
  "_score": 3.6989700043360187,
  "_indexed": true,
  "_nocasepkg": "fluidigm",
  "_universes": [
    "fischuu"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.2",
      "date": "2026-06-02T10:04:52.000Z",
      "distro": "noble",
      "commit": "e315c14ea57a391d32bb4b32783ff0c1dd1a8dde",
      "fileid": "1e7e05ff8c626f20b1443a0c03896b7ac9bae996457af0e3aea3ea5227b4a39b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/fischuu/actions/runs/26812522245"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.2",
      "date": "2026-06-02T10:04:25.000Z",
      "distro": "noble",
      "commit": "e315c14ea57a391d32bb4b32783ff0c1dd1a8dde",
      "fileid": "e0d6ee914ccbef229c284cdc6f1687153f7830863c6f3a2a6cc5266c1a00ae0d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/fischuu/actions/runs/26812522245"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.2",
      "date": "2026-06-02T10:04:35.000Z",
      "commit": "e315c14ea57a391d32bb4b32783ff0c1dd1a8dde",
      "fileid": "2b1f952d49ddd0fe105601e7ff63a5c4b6b918a16c4e099a7bba3ea65b750055",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/fischuu/actions/runs/26812522245"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.2",
      "date": "2026-06-02T10:04:17.000Z",
      "commit": "e315c14ea57a391d32bb4b32783ff0c1dd1a8dde",
      "fileid": "d9139eae0f45a2396b888c607ae01e67d7ec8993a620dfa6ad5138427c623a80",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/fischuu/actions/runs/26812522245"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.2",
      "date": "2026-06-02T10:05:15.000Z",
      "commit": "e315c14ea57a391d32bb4b32783ff0c1dd1a8dde",
      "fileid": "d69919b2130400ead2aa28583d52f3225dfa969a496474e1f50c0055d96dd999",
      "status": "success",
      "buildurl": "https://github.com/r-universe/fischuu/actions/runs/26812522245"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.2",
      "date": "2026-06-02T10:04:03.000Z",
      "commit": "e315c14ea57a391d32bb4b32783ff0c1dd1a8dde",
      "fileid": "a568c987630ac8bfbb39e4b521b3e9a6df0fc15b28722593a812fff04de6c756",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/fischuu/actions/runs/26812522245"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.2",
      "date": "2026-06-02T10:03:44.000Z",
      "commit": "e315c14ea57a391d32bb4b32783ff0c1dd1a8dde",
      "fileid": "aee356a5ba544e1b3c138e5ca405fe46a47b56cf8bc8917454ecaaf7889cbbfb",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/fischuu/actions/runs/26812522245"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.2",
      "date": "2026-06-02T10:03:44.000Z",
      "commit": "e315c14ea57a391d32bb4b32783ff0c1dd1a8dde",
      "fileid": "c557ada57a8b7bcdf9e5f8bea3f28594a48c6b65938c9865670c50222799ee7c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/fischuu/actions/runs/26812522245"
    }
  ]
}