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  "Title": "Handling Fluidigm Data",
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  "Description": "Designed to streamline the process of analyzing genotyping\ndata from Fluidigm machines, this package offers a suite of\ntools for data handling and analysis. It includes functions for\nconverting Fluidigm data to format used by 'PLINK', estimating\nerrors, calculating pairwise similarities, determining pairwise\nsimilarity loci, and generating a similarity matrix.",
  "License": "GPL-3",
  "Encoding": "UTF-8",
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  "Repository": "https://fischuu.r-universe.dev",
  "Date/Publication": "2024-03-13 05:48:53 UTC",
  "RemoteUrl": "https://github.com/fischuu/fluidigm",
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      "page": "calculatePairwiseSimilarities",
      "title": "Run plink to Calculate Pairwise Similarities",
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        "Fluidigm"
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        "Requirements",
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      "created": "2024-02-16 16:48:09",
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