{
  "_id": "6abcce3599f7aa8c6aa4c054",
  "Package": "Fluidigm",
  "Title": "Handling Fluidigm Data",
  "Version": "0.2",
  "Authors@R": "c(person(given=\"Daniel\", family=\"Fischer\", email=\"Daniel.Fischer@luke.fi\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-7513-683X\")),\nperson(given=\"Helena\", family=\"Johansson\", role = c(\"ctb\", \"fnd\")),\nperson(given=\"Robert\", family=\"Ekblom\", role = c(\"aut\"),\ncomment = c(ORCID = \"0000-0003-2222-1966\")))",
  "Description": "Designed to streamline the process of analyzing genotyping\ndata from Fluidigm machines, this package offers a suite of\ntools for data handling and analysis. It includes functions for\nconverting Fluidigm data to format used by 'PLINK', estimating\nerrors, calculating pairwise similarities, determining pairwise\nsimilarity loci, and generating a similarity matrix.",
  "License": "GPL-3",
  "Encoding": "UTF-8",
  "SystemRequirements": "perl (>= 5.10.0), plink (>=1.07)",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.2.3",
  "VignetteBuilder": "knitr",
  "Config/pak/sysreqs": "perl",
  "Repository": "https://fischuu.r-universe.dev",
  "Date/Publication": "2024-03-13 05:48:53 UTC",
  "RemoteUrl": "https://github.com/fischuu/fluidigm",
  "RemoteRef": "HEAD",
  "RemoteSha": "e315c14ea57a391d32bb4b32783ff0c1dd1a8dde",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-09-30 08:13:12 UTC",
    "User": "root"
  },
  "Author": "Daniel Fischer [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-7513-683X>),\nHelena Johansson [ctb, fnd],\nRobert Ekblom [aut] (ORCID: <https://orcid.org/0000-0003-2222-1966>)",
  "Maintainer": "Daniel Fischer <Daniel.Fischer@luke.fi>",
  "_user": "fischuu",
  "_type": "src",
  "_file": "Fluidigm_0.2.tar.gz",
  "_fileid": "https://r2.ropensci.org/5eda4e76a09168998fc6769b6d7a06fb0e2d2c5fa8362a539ddea672b19e7205",
  "_filesize": 458223,
  "_sha256": "5eda4e76a09168998fc6769b6d7a06fb0e2d2c5fa8362a539ddea672b19e7205",
  "_expires": "2027-01-08T08:54:11.000Z",
  "_created": "2026-09-30T08:13:12.000Z",
  "_published": "2026-09-30T08:54:13.563Z",
  "_jobs": [
    {
      "job": 109799463640,
      "time": 115,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11084412493"
    },
    {
      "job": 109799463329,
      "time": 134,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11084323855"
    },
    {
      "job": 109799463604,
      "time": 93,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11085963082"
    },
    {
      "job": 109799463399,
      "time": 102,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11085733810"
    },
    {
      "job": 109797252045,
      "time": 394,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11084566949"
    },
    {
      "job": 109799463353,
      "time": 118,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "11084054412"
    },
    {
      "job": 109799463560,
      "time": 66,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11084187484"
    },
    {
      "job": 109799463522,
      "time": 62,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11084773155"
    },
    {
      "job": 109799463531,
      "time": 78,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11084836944"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/fischuu/actions/runs/36687665965",
  "_status": "success",
  "_upstream": "https://github.com/fischuu/fluidigm",
  "_commit": {
    "id": "e315c14ea57a391d32bb4b32783ff0c1dd1a8dde",
    "author": "Daniel Fischer <github@danielfischer.name>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Logo path adjusted",
    "time": 1710308933
  },
  "_maintainer": {
    "name": "Daniel Fischer",
    "email": "daniel.fischer@luke.fi",
    "login": "fischuu",
    "mastodon": "@fischuu@genomic.social",
    "bluesky": "@fischuu.bsky.social",
    "linkedin": "in/fischuu",
    "twitter": "@fischuu",
    "description": "Bioinformatics & statistics @lukefi",
    "uuid": 3908800,
    "orcid": "0000-0002-7513-683X"
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "data.table",
      "version": ">= 1.9.4",
      "role": "Imports"
    },
    {
      "package": "graphics",
      "role": "Imports"
    },
    {
      "package": "grDevices",
      "role": "Imports"
    },
    {
      "package": "reshape",
      "version": ">= 0.8.8",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "digest",
      "role": "Suggests"
    }
  ],
  "_owner": "fischuu",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 1,
  "_contributors": [
    {
      "user": "fischuu",
      "count": 57,
      "uuid": 3908800
    }
  ],
  "_userbio": {
    "uuid": 3908800,
    "type": "user",
    "name": "Daniel Fischer",
    "followers": 24,
    "description": "Bioinformatics & statistics @lukefi"
  },
  "_downloads": {
    "count": 295,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/Fluidigm"
  },
  "_devurl": "https://github.com/fischuu/fluidigm",
  "_searchresults": 0,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/Fluidigm.html",
    "extra/manual.pdf",
    "extra/readme.html",
    "extra/readme.md"
  ],
  "_homeurl": "https://github.com/fischuu/fluidigm",
  "_realowner": "fischuu",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.2",
      "date": "2024-03-12"
    }
  ],
  "_exports": [
    "calculatePairwiseSimilarities",
    "estimateErrors",
    "fluidigm2PLINK",
    "fluidigmAnalysisWrapper",
    "getPairwiseSimilarityLoci",
    "similarityMatrix"
  ],
  "_help": [
    {
      "page": "calculatePairwiseSimilarities",
      "title": "Run plink to Calculate Pairwise Similarities",
      "topics": [
        "calculatePairwiseSimilarities"
      ]
    },
    {
      "page": "estimateErrors",
      "title": "Estimate Errors in 'PLINK'' ped files",
      "topics": [
        "estimateErrors"
      ]
    },
    {
      "page": "Fluidigm",
      "title": "Fluidigm",
      "topics": [
        "Fluidigm-package",
        "Fluidigm"
      ]
    },
    {
      "page": "fluidigm2PLINK",
      "title": "Convert Fluidigm Output to 'PLINK' Format",
      "topics": [
        "fluidigm2PLINK"
      ]
    },
    {
      "page": "fluidigmAnalysisWrapper",
      "title": "Run the Fluidigm Analysis Script Together",
      "topics": [
        "fluidigmAnalysisWrapper"
      ]
    },
    {
      "page": "getPairwiseSimilarityLoci",
      "title": "Get Pairwise Similarity Loci",
      "topics": [
        "getPairwiseSimilarityLoci"
      ]
    },
    {
      "page": "similarityMatrix",
      "title": "Calculate the similarity matrix",
      "topics": [
        "similarityMatrix"
      ]
    }
  ],
  "_readme": "https://github.com/fischuu/fluidigm/raw/HEAD/README.md",
  "_rundeps": [
    "data.table",
    "plyr",
    "Rcpp",
    "reshape"
  ],
  "_vignettes": [
    {
      "source": "Vignette.Rmd",
      "filename": "Vignette.html",
      "title": "Vignette",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Preparations",
        "Requirements",
        "Installation",
        "Cran (tba)",
        "GitHub",
        "Usage",
        "Example data and preparations",
        "Fluidigm to Plink",
        "Output",
        "Estimate errors",
        "Replicates",
        "Calculate pairwise similarities",
        "Get pairwise similarity loci",
        "Similarity Matrix",
        "Run all commands at once",
        "FAQ"
      ],
      "created": "2024-02-16 16:48:09",
      "modified": "2024-02-26 13:50:25",
      "commits": 12
    }
  ],
  "_score": 3.6989700043360187,
  "_indexed": true,
  "_nocasepkg": "fluidigm",
  "_universes": [
    "fischuu"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.2",
      "date": "2026-09-30T08:15:14.000Z",
      "distro": "resolute",
      "commit": "e315c14ea57a391d32bb4b32783ff0c1dd1a8dde",
      "fileid": "https://r2.ropensci.org/5dd2921994e6e2a28e906d9a452bbed008fa40779f6f2eebed422a1ad9a168ca",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/fischuu/actions/runs/36687665965"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.2",
      "date": "2026-09-30T08:15:30.000Z",
      "distro": "resolute",
      "commit": "e315c14ea57a391d32bb4b32783ff0c1dd1a8dde",
      "fileid": "https://r2.ropensci.org/d151c1713b47d81064ebabddbc821991a39c7c589aa61752bfe7ef62cb0e6466",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/fischuu/actions/runs/36687665965"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.2",
      "date": "2026-09-30T08:53:37.000Z",
      "commit": "e315c14ea57a391d32bb4b32783ff0c1dd1a8dde",
      "fileid": "https://r2.ropensci.org/d57fd9fba37b254928fcefc445700dc55e6cad0ffdbd19933f925de3135a066e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/fischuu/actions/runs/36687665965"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.2",
      "date": "2026-09-30T08:53:16.000Z",
      "commit": "e315c14ea57a391d32bb4b32783ff0c1dd1a8dde",
      "fileid": "https://r2.ropensci.org/a35a7ddad7e64416a7b166fce6e8a63b6ab44badffe9d2563cc71c74a8488fbe",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/fischuu/actions/runs/36687665965"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.2",
      "date": "2026-09-30T08:15:25.000Z",
      "commit": "e315c14ea57a391d32bb4b32783ff0c1dd1a8dde",
      "fileid": "https://r2.ropensci.org/aba4ea2b83e66bd91c86c0ce78470a71e69291a390b6935c6c244d706826af13",
      "status": "success",
      "buildurl": "https://github.com/r-universe/fischuu/actions/runs/36687665965"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.2",
      "date": "2026-09-30T08:14:12.000Z",
      "commit": "e315c14ea57a391d32bb4b32783ff0c1dd1a8dde",
      "fileid": "https://r2.ropensci.org/10a66cdafe250733e0cb3586688832ba0e8da94c20093e17a1826c31aad0e8c9",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/fischuu/actions/runs/36687665965"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.2",
      "date": "2026-09-30T08:14:13.000Z",
      "commit": "e315c14ea57a391d32bb4b32783ff0c1dd1a8dde",
      "fileid": "https://r2.ropensci.org/2b6ac6767e6b4012bdd617d7be3c33a1e78cd12f7190b64af47c8b1e4da298cc",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/fischuu/actions/runs/36687665965"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.2",
      "date": "2026-09-30T08:14:28.000Z",
      "commit": "e315c14ea57a391d32bb4b32783ff0c1dd1a8dde",
      "fileid": "https://r2.ropensci.org/df52a28e4ac0fa171e6c3faaea74313eb0a7c3916cce13477370df722234651c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/fischuu/actions/runs/36687665965"
    }
  ]
}